MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
MS Annika is my main PhD project, the biggest features that I developed were:
- Crosslink identification from MS2-MS3-acquisition, which can be read about -> here
- Crosslink identification from non-cleavable reagents, which can be read about -> here (wip)