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Projects

Some of the projects are from work and some of them were created out of interest in my own time ;)

MS Annika

MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.

pyXLMS

pyXLMS is a python package that aims to simplify and streamline the intermediate step of connecting crosslink search engine results with down-stream analysis tools.

READ

READ is a python-based tool to orchestrate TMTpro-18plex quantification for [single cell] DIA and DDA searches with Chimerys, Spectronaut, and DIA-NN.

Templates

Project templates for several programming languages.

PIA

PIA extracts protein-ligand interactions and their frequencies to score and predict the activity of a complex.

VSCO Downloader

VSCO Downloader is a python script to extract and download images and videos in full resolution from VSCO.

Instagram JSON Viewer

Instagram JSON Viewer is a python script that transforms Instagram's data - that you get via the Data Download Tool - to a readable format!

NeuralNet

A "from scratch" implementation of classic feed-forward neural networks for binary/multi-class classification using ReLU activations, cross entropy loss and sigmoid/softmax output.